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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116485221_116485456_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116485221 - 116485456
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
TGCAAGCAAACT
Flanking Amino Acid:
LKYAMFLEDEGKFEEAEAEF
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
79.6
0.67
0.7
73.3
31.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
36.1
-0.9
2.4
55.08
46.1

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582