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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116489495_116489938_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116489495 - 116489938
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTCTGATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATTTCTGATGC
Flanking Amino Acid:
DAAINHYIEARCSVKAIEAA
Intron Amino Acid Position:
1187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.6
0.42
1
62.9
43
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
48.5
-0.1
2
63.96
41.5

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426