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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11648983_11651486_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11648983 - 11651486
Intron Length:
2504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
ATCTAATGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTTCTTGATCT
Flanking Amino Acid:
RKETEPHHEFPDSSDFLDNS
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
72.2
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
60.7
0.24
1.1
55.2
43
Minor 5ss
33.2
-1.9
2.8
42.6
38.5
Minor BPS
62.6
0.47
1.7
81.71
39.7

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009465
11612943 - 11690983
78041