About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116490527_116491743_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116490527 - 116491743
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGGAA
U12 Branch Point Sequence:
GGCTCTGGAAAC
Flanking Amino Acid:
ALIRGELYEQAGDLFEKVGN
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
49.8
-0
1.4
51.3
44.2
Major PPT
73
0.52
1
73.5
41.9
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
42.5
-0.5
2.1
49.88
40.2

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426