About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116491993_116492878_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116491993 - 116492878
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAC
5'SS Class:
major
3'SS Sequence:
GATTTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
GATTTCTCAACA
Flanking Amino Acid:
DECIVVAEAKGHPMLDKLRR
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
68.1
36.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
72.1
0.5
1
66.8
39.1
Minor 5ss
38
-1.4
3.2
50.7
46.2
Minor BPS
67.2
0.54
1.5
73.7
37.5

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426