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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116492957_116494152_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116492957 - 116494152
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGCTCTTTAACA
Flanking Amino Acid:
KLAEMIFLEQNATEEAMDMY
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.7
0.53
0.9
69.1
34.8
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
79.3
0.92
1.1
79.83
36.4

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582