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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116501193_116501790_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116501193 - 116501790
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAA
U12 Branch Point Sequence:
TTTTCTGTAAGA
Flanking Amino Acid:
NEKFFFDNENVCMIFNAGEL
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
49.9
-0
1.4
51.6
43.9
Major PPT
86.3
0.82
0.7
80.5
25
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
58.9
0.28
2.3
78.6
38.6

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493