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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116503133_116504040_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116503133 - 116504040
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCACATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACAT
Flanking Amino Acid:
FEMTYVGPSQVIVKNLSTGT
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.6
0.58
0.9
69.3
36.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
56.6
0.29
1.9
81.14
40.4

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493