Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116508264_116510822_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116508264 - 116510822

Intron Length:

2559

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

CAATATTGATCA

Flanking Amino Acid:

KVICNKFIQMVRLANTKNNK

Intron Amino Acid Position:

441

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

0.9

73.3

37.3

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

88.2

0.86

0.6

87.7

22.4

Minor 5ss

32.6

-2

3.3

45.3

43.7

Minor BPS

44.3

-0.4

1.8

51.31

39.9

Associated Gene:

Gene:

IFT172

Ensembl Gene ID:

ENSAPLG00000004257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004476

116472650 - 116512975

40326