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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116511874_116511952_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116511874 - 116511952
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGGCCG
5'SS Class:
major
3'SS Sequence:
GTGTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GGCGCCTGAGGC
Flanking Amino Acid:
RHVRTLLAPQDGTARVTCMA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.4
50.5
40.3
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
69.1
0.43
1
62.2
39.8
Minor 5ss
25.1
-2.9
3.2
30.7
42.7
Minor BPS
41.1
-0.6
1.9
44.59
43.2

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582