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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116515476_116516450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116515476 - 116516450
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCATA
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAC
U12 Branch Point Sequence:
TTACTCTGAGCA
Flanking Amino Acid:
KEIVENISIYRISYCTTDKL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.1
38.4
Major BPS
59.1
0.23
1.2
52.7
42.9
Major PPT
77.6
0.62
0.8
71.8
32.8
Minor 5ss
36.1
-1.6
3.2
47.6
48.1
Minor BPS
52.4
0.07
1.7
66.78
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004165
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004273
116512239 - 116519488
7250