About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11651550_11658279_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11651550 - 11658279
Intron Length:
6730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAG
Flanking Amino Acid:
DIYYTARSNLDLQLEYGHGP
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
69.5
35.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
53.8
0.13
2.3
67
39.2
Minor BPS
57
0.08
1.5
60.51
41.6

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009465
11612943 - 11690983
78041