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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116516566_116516925_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116516566 - 116516925
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTCTTGTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAC
U12 Branch Point Sequence:
CTTTCTTGTACA
Flanking Amino Acid:
HAFLSPKKKIAQAVTLTVAQ
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
76.5
38.6
Major BPS
49.7
-0
1.4
52.7
42.9
Major PPT
76.7
0.6
0.9
72.2
37
Minor 5ss
47.9
-0.2
2.9
72.7
37.8
Minor BPS
57.9
0.24
1.8
71.77
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004165
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004273
116512239 - 116519488
7250