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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116517760_116517846_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
116517760 - 116517846
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCAGCAT
5'SS Class:
weak_major
3'SS Sequence:
CTTGGTGCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGCTCTGTACTC
Flanking Amino Acid:
LVFAPGTPLSAWGDTTSLKE
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.4
54
44.7
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
68.2
0.41
1
61.2
40.3
Minor 5ss
26.1
-2.7
3.4
38.7
46.4
Minor BPS
45.9
-0.3
2.2
57.91
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004165
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004273
116512239 - 116519488
7250