Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116517988_116518499_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116517988 - 116518499

Intron Length:

512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTCTC

5'SS Class:

major

3'SS Sequence:

CTTTGTTTGCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGAGAC

U12 Branch Point Sequence:

AGAGACCTACCT

Flanking Amino Acid:

VQSQPKHSQC*

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

70.9

39.2

Major BPS

48.5

-0

1.2

44.4

38.7

Major PPT

66.8

0.38

1.2

67.2

Minor 5ss

41.4

-1

3.1

59.7

38.9

Minor BPS

42.1

-0.5

2.1

58.03

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004273

116512239 - 116519488

7250