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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116523941_116527151_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116523941 - 116527151
Intron Length:
3211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
AGGTTCTTAGCA
Flanking Amino Acid:
RPTGGLLRSKKSPSVNIIEV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
81.4
0.71
0.7
77.3
24.8
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
60.5
0.33
1.6
66.21
40.2

Associated Gene:

Gene:
FNDC4
Ensembl Gene ID:
ENSAPLG00000004123
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004222
116523908 - 116535672
11765