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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116527286_116528610_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116527286 - 116528610
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAG
U12 Branch Point Sequence:
TCTTTCTTCCCT
Flanking Amino Acid:
IIVAVLLMWAAVIALFCRQY
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
49.4
-0
1.6
48.8
46.3
Major PPT
84.9
0.79
0.7
80
25.4
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
45
-0.3
3.6
78.66
44.1

Associated Gene:

Gene:
FNDC4
Ensembl Gene ID:
ENSAPLG00000004123
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004222
116523908 - 116535672
11765