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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116528701_116529551_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116528701 - 116529551
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
CTCTTCTCCACA
Flanking Amino Acid:
DRLPSNSSNQGDITMEGLDK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
80.8
0.69
0.7
75.7
26.5
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
49
-0
2
62.43
44.3

Associated Gene:

Gene:
FNDC4
Ensembl Gene ID:
ENSAPLG00000004123
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004222
116523908 - 116535672
11765