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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116529757_116530286_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
116529757 - 116530286
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCAGG
5'SS Class:
weak_major
3'SS Sequence:
TTCACTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CAGCTCTTCACT
Flanking Amino Acid:
VVIGYAILQQRQDGQMQRFI
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
56.2
48.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.8
0.51
1
69.2
36.8
Minor 5ss
51.5
0.05
2.2
66.5
44.6
Minor BPS
51.3
0.12
1.8
65.8
44.8

Associated Gene:

Gene:
FNDC4
Ensembl Gene ID:
ENSAPLG00000004123
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004222
116523908 - 116535672
11765