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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116539358_116556932_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116539358 - 116556932
Intron Length:
17575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
CCTTCTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
CCTTCTCTAACA
Flanking Amino Acid:
SSAGAEKTRRSGPHQTLIR*
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
77.4
0.62
0.8
72.9
30.5
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
63.2
0.41
1.7
71.45
41.1

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044945
116538673 - 116577610
38938