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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116540823_116555051_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116540823 - 116555051
Intron Length:
14229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
ACCTCTCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTGCCTAAACC
Flanking Amino Acid:
SEDDEIKHYQSLS*
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
60.7
39.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.7
0.58
0.8
72.8
31.2
Minor 5ss
29.4
-2.4
2.9
32.3
42
Minor BPS
70.9
0.64
1.8
82.21
38.6

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042069
116540370 - 116577610
37241