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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116540887_116556932_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116540887 - 116556932
Intron Length:
16046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
TCATACCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACCT
Flanking Amino Acid:
SSAGAEKTRRS*
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.8
0.49
0.9
62.8
39.1
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
60.2
0.4
1.9
82.93
38.1

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024614
116540370 - 116577610
37241