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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116557114_116557571_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116557114 - 116557571
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTAACCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCCTTCTAACC
Flanking Amino Acid:
KYHINSVHAEDWFDVNTSTT
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.3
0.52
0.9
62.8
39.2
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
49.9
-0
1.7
60.67
38.5

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241
ENSAPLT00000003964
116554888 - 116575532
20645
ENSAPLT00000044945
116538673 - 116577610
38938