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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116558204_116559524_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116558204 - 116559524
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AGGCATCTAATT
Flanking Amino Acid:
MYRRVHCPNQGCESVYGSVS
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87.1
0.84
0.8
84.9
29.9
Minor 5ss
43.9
-0.7
3.2
65.5
45.6
Minor BPS
45.2
-0.2
1.7
58.45
38.4

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024614
116540370 - 116577610
37241
ENSAPLT00000003964
116554888 - 116575532
20645
ENSAPLT00000044945
116538673 - 116577610
38938
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241