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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116562241_116563424_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116562241 - 116563424
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCGA
5'SS Class:
major
3'SS Sequence:
TGCTGTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATC
Flanking Amino Acid:
YHVMADHNNQPVVKEGGELD
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
62.5
43.6
Major BPS
100
1.24
0.5
100
0
Major PPT
69
0.43
0.9
65.8
41
Minor 5ss
30.2
-2.3
3.2
39.4
45.8
Minor BPS
62.7
0.38
2
79.43
36

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003964
116554888 - 116575532
20645
ENSAPLT00000044945
116538673 - 116577610
38938
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241