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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116563512_116563869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116563512 - 116563869
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CCTTGTTTATTT
Flanking Amino Acid:
LKKHMLNCRQEMFTCHHCGK
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.7
0.73
0.8
78.1
35.3
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
48.8
-0
2
66.47
45.5

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241
ENSAPLT00000003964
116554888 - 116575532
20645
ENSAPLT00000044945
116538673 - 116577610
38938
ENSAPLT00000042069
116540370 - 116577610
37241