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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116565314_116569484_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116565314 - 116569484
Intron Length:
4171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATATAA
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TAGAATTTAAGT
Flanking Amino Acid:
DSPKKKQKISAGKKQQAGAQ
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
68.5
32
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
80.8
0.69
0.9
76.5
37.7
Minor 5ss
37.5
-1.4
3
44.2
45.4
Minor BPS
49.5
0.04
1.8
66.7
43.8

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241
ENSAPLT00000044945
116538673 - 116577610
38938