About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116565314_116575252_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116565314 - 116575252
Intron Length:
9939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGTC
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TAGAATTTAAGT
Flanking Amino Acid:
NSINKSSPKKAGKKQQAGAQ
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
63.6
41.4
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
80.8
0.69
0.9
76.5
37.7
Minor 5ss
39.9
-1.1
3.6
59
45.8
Minor BPS
49.5
0.04
1.8
66.7
43.8

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003964
116554888 - 116575532
20645