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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116575462_116575979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116575462 - 116575979
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TGATCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATACAAATAATT
Flanking Amino Acid:
QKAKRSLGNRKSKQFEEVET
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.6
0.71
0.9
73.2
41.8
Minor 5ss
39.8
-1.1
3.1
48.3
42.4
Minor BPS
45.1
-0.2
1.9
64.78
38.7

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044945
116538673 - 116577610
38938
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241