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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116576039_116577589_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116576039 - 116577589
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TCTACTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTATATTACTA
Flanking Amino Acid:
MRGGGGSDTRPVHHGQQ
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.5
0.51
1
73.1
37.1
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
48.5
-0.1
1.8
63.15
37.2

Associated Gene:

Gene:
ZNF512
Ensembl Gene ID:
ENSAPLG00000003840
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044945
116538673 - 116577610
38938
ENSAPLT00000042069
116540370 - 116577610
37241
ENSAPLT00000041726
116540370 - 116577610
37241
ENSAPLT00000024614
116540370 - 116577610
37241