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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116578146_116579193_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116578146 - 116579193
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATATTAAAACT
Flanking Amino Acid:
RAQPALPCQHRYPGHCEVQR
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.5
0.49
0.8
68.2
32.7
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
47.9
-0
1.9
70.25
40.7

Associated Gene:

Gene:
GPN1
Ensembl Gene ID:
ENSAPLG00000003530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003637
116577053 - 116595515
18463