Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116579234_116580752_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

116579234 - 116580752

Intron Length:

1519

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

ATGGAGTGTCTAG|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TAGTCAT

U12 Branch Point Sequence:

CTTTCCTAAATG

Flanking Amino Acid:

DTVKYKEVMKQYGLGPNGGI

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.2

0.03

1.2

56.4

43.4

Major BPS

0.67

1.1

77.7

37.1

Major PPT

53.8

0.09

1.1

43.5

46.8

Minor 5ss

97.5

1.6

0.6

95.7

13.5

Minor BPS

66.8

0.39

1.8

70.75

43.1

Associated Gene:

Gene:

GPN1

Ensembl Gene ID:

ENSAPLG00000003530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017968

116577053 - 116595561

18509