Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116580820_116581550_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116580820 - 116581550

Intron Length:

731

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCAATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCTTTTTCAATC

Flanking Amino Acid:

LNLFATRFDQVMKFIEKRQN

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

71.6

38.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

78.3

0.64

0.9

78.9

33.4

Minor 5ss

38.2

-1.3

3.4

56.2

Minor BPS

0.36

1.5

69.41

36.9

Associated Gene:

Gene:

GPN1

Ensembl Gene ID:

ENSAPLG00000003530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017968

116577053 - 116595561

18509