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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11658339_11659453_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11658339 - 11659453
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATT
Flanking Amino Acid:
PQGGYFLGANKSLLKSVEEE
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.9
0.49
1.1
72.3
37.7
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
72.5
0.78
1.4
84.41
36.8

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041