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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116584588_116587296_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116584588 - 116587296
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCATTATTACTT
Flanking Amino Acid:
KLPFIVVMNKTDIIDHSFAV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
50
0.08
1.9
69.07
42.3

Associated Gene:

Gene:
GPN1
Ensembl Gene ID:
ENSAPLG00000003530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017968
116577053 - 116595561
18509
ENSAPLT00000003637
116577053 - 116595515
18463