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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11659493_11659788_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11659493 - 11659788
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATTCTA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CCTTGTTTATTT
Flanking Amino Acid:
LKSVEEELHQRGHVAHLEDD
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.2
40.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.9
0.78
0.7
84.9
29.7
Minor 5ss
38.4
-1.3
3
51.1
45.2
Minor BPS
48.8
-0
2
66.47
45.5

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041