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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11664184_11665223_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11664184 - 11665223
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGAATCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAATC
Flanking Amino Acid:
RLPPQKSNVLGNGFTSVQLN
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.1
0.45
0.9
67
40.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
59.7
0.28
1.7
66.46
39.9

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041