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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11665334_11667065_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11665334 - 11667065
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGTTTTTTAACT
Flanking Amino Acid:
FSRREKKEILKPISNGLPPT
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.8
35.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
32.6
-2
3.1
38.1
42.1
Minor BPS
78.6
0.97
1
86.63
32.6

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041