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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11677453_11679933_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11677453 - 11679933
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTACCCTACCT
Flanking Amino Acid:
DTKWCQKCCVVRNPYTGHKY
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.5
0.8
0.9
84
31
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
55
0.23
2
78.65
42.9

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021804
11612943 - 11690983
78041
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676