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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11681047_11683617_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11681047 - 11683617
Intron Length:
2571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCA
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTTCTTATAG
Flanking Amino Acid:
NSTSSWFTETDTTETSVVHV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.9
35.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86
0.81
0.7
81.3
30.1
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
63.5
0.29
1.8
72.21
40.6

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021804
11612943 - 11690983
78041
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041