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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11683898_11685750_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11683898 - 11685750
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
TATGCCTGAACA
Flanking Amino Acid:
LTFDFQIESIVCLQDSVLAF
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
79.5
0.66
0.9
74.6
40
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
69.9
0.62
1.5
77.81
38.5

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000021804
11612943 - 11690983
78041