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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11712378_11714708_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11712378 - 11714708
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TATTTCTTCATA
Flanking Amino Acid:
VGSCFEDMAEELAFDPYESY
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.1
0.7
0.7
76.8
31.5
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
65.3
0.47
1.7
75.8
35.8

Associated Gene:

Gene:
SOS1
Ensembl Gene ID:
ENSAPLG00000010443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010932
11696422 - 11743016
46595