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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11726750_11727747_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11726750 - 11727747
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACACG
5'SS Class:
major
3'SS Sequence:
TCCTACGTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTCCCATCC
Flanking Amino Acid:
CSKSLAKRRLSESACRFYTQ
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.7
42.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
63.8
0.31
1.1
63.3
37
Minor 5ss
39.1
-1.2
2.9
49.5
46.5
Minor BPS
49
-0.1
2.1
71.11
40.1

Associated Gene:

Gene:
SOS1
Ensembl Gene ID:
ENSAPLG00000010443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010932
11696422 - 11743016
46595