Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1173048_1188252_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1173048 - 1188252

Intron Length:

15205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTGCT

5'SS Class:

major

3'SS Sequence:

TATATTTCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TATTCCTAATCT

Flanking Amino Acid:

TPYSTAVSTSGCGEHLVRTI

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

73.4

35.4

Major BPS

79.2

0.73

75.3

39.4

Major PPT

75.5

0.57

0.8

74.2

36.1

Minor 5ss

41.5

-0.9

3.1

59.5

Minor BPS

65.2

0.56

1.9

85.19

41.2

Associated Gene:

Gene:

TASP1

Ensembl Gene ID:

ENSAPLG00000011487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038158

1148624 - 1230576

81953

ENSAPLT00000012059

1148395 - 1230576

82182