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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11733030_11733436_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11733030 - 11733436
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAC
5'SS Class:
major
3'SS Sequence:
CCTTCTGTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATCCCCACCT
Flanking Amino Acid:
PQELLSLLIERFEIPEPEPT
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65
41.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
66.7
0.38
1
61
40.2
Minor 5ss
44.3
-0.6
2.8
58.6
46.2
Minor BPS
50.3
0.09
2.2
78.28
43.4

Associated Gene:

Gene:
SOS1
Ensembl Gene ID:
ENSAPLG00000010443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010932
11696422 - 11743016
46595