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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11736344_11736668_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11736344 - 11736668
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATTT
Flanking Amino Acid:
HTTNLTLWFEKCIVETENLE
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.4
0.64
0.9
77.7
35.8
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
54.2
0.21
2
74.81
43.2

Associated Gene:

Gene:
SOS1
Ensembl Gene ID:
ENSAPLG00000010443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010932
11696422 - 11743016
46595