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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11736832_11737188_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11736832 - 11737188
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TGTCTCTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTTCCAAATA
Flanking Amino Acid:
AVYRLDHTFEQIPSRQKKIL
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
78.9
0.65
0.8
74
31.1
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
50.7
0.02
2
68.19
38.5

Associated Gene:

Gene:
SOS1
Ensembl Gene ID:
ENSAPLG00000010443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010932
11696422 - 11743016
46595