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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11780839_11783036_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11780839 - 11783036
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
CATGTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TCTTTATTAACA
Flanking Amino Acid:
AKYIGPFNENKMEGEGDFID
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.4
0.57
1
68.1
42
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
72
0.69
1.5
80.01
35.9

Associated Gene:

Gene:
MORN2
Ensembl Gene ID:
ENSAPLG00000011332
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011783
11780736 - 11784567
3832