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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11786778_11787048_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11786778 - 11787048
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
TCTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCATTTTAATT
Flanking Amino Acid:
LQGQDLAPESEVAGSGEDDD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
69.9
37.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88
0.86
0.8
89.1
26.1
Minor 5ss
41.4
-1
2.7
47.7
41.9
Minor BPS
69.3
0.68
1.2
79.53
37.3

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272