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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11787220_11787899_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11787220 - 11787899
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGTTGCCACATT
Flanking Amino Acid:
VSAFAVHKLSRYGFDSERCR
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
64.9
0.37
1
67
29.8
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
40.3
-0.6
2.5
64.84
45.9

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272